BiQAnalyzer HT is the major upgrade of the popular BiQAnalyzer tool specifically designed to aid the analysis of high-throughput bisulfite amplicon sequencing data. BiQAnalyzer HT currently allows to process an amount of bisulfite sequencing reads obtained in one or several bisulfite sequencing experiments. In the same time an average analysis run does not last longer than several minutes. All the analysis settings including the alignment, quality filtering and data representation parameters are fully customizable.
BiQAnalyzer HT is available via Java Web Start.
BiQAnalyzer HT is being developed as a cooperation project with the Epigenetics lab at Saarland University, Saarbruecken (Prof. Joern Walter).
If you use BiQAnalyzer HT for your work please cite:
Pavlo Lutsik, Lars Feuerbach, Julia Arand, Thomas Lengauer, J�rn Walter and Christoph Bock. BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing. Nucleic Acids Research, May 11, 2011 [Epub ahead of print] (Full text).
In case you run into problems while running BiQAnalyzer HT please post a bug report or request a new feature at the program discussion forum.